Molecular karyotyping for the detection of chromosomal imbalances

 

Array CGH analysis compares the entire genome of a patient with that of clinically inconspicuous individuals for losses and gains in genetic material. Identical DNA quantities of the test person and the reference DNA are labelled with different fluorescent dyes and then co-hybridised on the array. The microarray itself is a glass slide containing immobilized genomic DNA fragments (so-called oligonucleotides) in a raster pattern. If there is a genomic loss or gain in the patient sample compared to the reference DNA, there is a shift in the hybridization ratio. This manifests itself in a color change of the fluorescence signal, which is detected by a laser scanner. The data is then extracted and evaluated with special software.

Array CGH analysis is a high-resolution diagnostic examination and is indicated for patients with the following criteria:

  • Developmental and mental retardation
  • dysmorphic signs
  • Congenital malformations (e.g. heart defects, kidney malformations)
  • Malformations and dysfunctions of the brain
  • Pre- and postnatal growth retardation
  • Certain growth abnormalities (e.g. microcephaly)
  • Changes from the Autism Form Circle
  • Combined occurrence of the aforementioned anomalies
  • Precision of chromosome analysis: Exact determination of breakpoints, exact characterization of cytogenetically recognizable gains and losses.
  • Clarification of balanced chromosomal structural changes in patients with non-specific dysmorphic features.
  • Clarification of genomic rearrangements (e.g. marker chromosomes).

Clinical benefit

Array CGH analysis can detect much smaller deviations (microdeletions and duplications) in the patient's genome than conventional chromosome analysis. Using conventional chromosome analysis, structural genomic changes can be detected in only 3 to 4 percent of patients with developmental delays. Molecular cytogenetic techniques such as subtelomer FISH (fluorescence in situ hybridization) showed a further slight improvement in the detection rate. While FISH diagnostics is used to analyse specific regions for microdeletion/ duplication syndromes, array CGH can be used to detect changes at (almost) any location in the genome. In up to 20% of patients, array CGH analysis can be used to detect causal changes.

In addition to the resolution of unclear cases of mental retardation and rare syndromic disease patterns, array CGH can also be used to specify the gains and losses already detected by chromosome analysis by exact breakpoint determination, thus enabling a more precise genotype-phenotype correlation.

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Array-CGH
Material
TAT (after sample receipt):
Prenatal:

ca. 20 ml Fruchtwasser / mind. 30 mg Chorionzotten für Chromosomen- und Array-CGH-Analyse

Important:

EDTA / heparin blood of the mother or parents for a maternal exclusion of contamination or for a prompt further examination in the case of unclear copy number variants.

approx. 10 days (after harvesting of cells from cell culture)
Postnatal:

Infants: 1-2 ml EDTA blood

Children and adults: 3-5 ml EDTA blood

4 weeks

 

 

 
 

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